References
| ID | Article | Author | Published | Journals | DOI | Related strain number |
|---|---|---|---|---|---|---|
| 1 | Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments | Dunn B, Richter C, Kvitek DJ, Pugh T, Sherlock G. | 2012 May | Genome Research | 10.1101/gr.130310.111 | 2645-2653 |
| 2 | A high-definition view of functional genetic variation from natural yeast genomes | Bergström A, Simpson JT, Salinas F, Barré B, Parts L, Zia A, Nguyen Ba AN, Moses AM, Louis EJ, Mustonen V, Warringer J, Durbin R, Liti G. | 2014 Apr | Molecular Biology and Evolution | 10.1093/molbev/msu037 | 2643-2644 |
| 3 | A population genomics insight into the Mediterranean origins of wine yeast domestication | Almeida P, Barbosa R, Zalar P, Imanishi Y, Shimizu K, Turchetti B, Legras JL, Serra M, Dequin S, Couloux A, Guy J, Bensasson D, Gonçalves P, Sampaio JP. | 2015 Nov | Molecular Ecology | 10.1111/mec.13341 | 2562-2642 |
| 4 | A unique ecological niche fosters hybridization of oak-tree and vineyard isolates of Saccharomyces cerevisiae | Clowers KJ, Will JL, Gasch AP. | 2015 Dec | Molecular Ecology | 10.1111/mec.13439 | 2560-2561 |
| 5 | Dosage compensation can buffer copy-number variation in wild yeast | Hose J, Yong CM, Sardi M, Wang Z, Newton MA, Gasch AP. | 2015 May | eLife | 10.7554/eLife.05462 | 2544-2559 |
| 6 | Evolutionary Advantage Conferred by an Eukaryote-to-Eukaryote Gene Transfer Event in Wine Yeasts | Marsit S, Mena A, Bigey F, Sauvage FX, Couloux A, Guy J, Legras JL, Barrio E, Dequin S, Galeote V. | 2015 Jul | Molecular Biology and Evolution | 10.1093/molbev/msv057 | 2539-2543 |
| 7 | The 100-genomes strains, an S. cerevisiae resource that illuminates its natural phenotypic and genotypic variation and emergence as an opportunistic pathogen | Strope PK, Skelly DA, Kozmin SG, Mahadevan G, Stone EA, Magwene PM, Dietrich FS, McCusker JH. | 2015 May | Genome Research | 10.1101/gr.185538.114 | 2456-2538 |
| 8 | Outcrossing, mitotic recombination, and life-history trade-offs shape genome evolution in Saccharomyces cerevisiae | Magwene PM, Kayıkçı Ö, Granek JA, Reininga JM, Scholl Z, Murray D. | 2011 Feb | PNAS | 10.1073/pnas.1012544108 | 2449-2455 |
| 9 | Whole-genome sequencing of the efficient industrial fuel-ethanol fermentative Saccharomyces cerevisiae strain CAT-1 | Babrzadeh F, Jalili R, Wang C, Shokralla S, Pierce S, Robinson-Mosher A, Nyren P, Shafer RW, Basso LC, de Amorim HV, de Oliveira AJ, Davis RW, Ronaghi M, Gharizadeh B, Stambuk BU. | 2012 Jun | Molecular Genetics and Genomics | 10.1007/s00438-012-0695-7 | 2448 |
| 10 | Evidence of Natural Hybridization in Brazilian Wild Lineages of Saccharomyces cerevisiae | Barbosa R, Almeida P, Safar SV, Santos RO, Morais PB, Nielly-Thibault L, Leducq JB, Landry CR, Gonçalves P, Rosa CA, Sampaio JP. | 2016 Jan | Genome Biology and Evolution | 10.1093/gbe/evv263 | 2420-2447 |
| 11 | Whole Genome Comparison Reveals High Levels of Inbreeding and Strain Redundancy Across the Spectrum of Commercial Wine Strains of Saccharomyces cerevisiae | Borneman AR, Forgan AH, Kolouchova R, Fraser JA, Schmidt SA. | 2016 Apr | Genetics Society of America | 10.1534/g3.115.025692 | 2209-2419 |
| 12 | Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts | Gallone B, Steensels J, Prahl T, Soriaga L, Saels V, Herrera-Malaver B, Merlevede A, Roncoroni M, Voordeckers K, Miraglia L, Teiling C, Steffy B, Taylor M, Schwartz A, Richardson T, White C, Baele G, Maere S, Verstrepen KJ. | 2016 Sep | Cell | 10.1016/j.cell.2016.08.020 | 2052-2208 |
| 13 | European derived Saccharomyces cerevisiae colonisation of New Zealand vineyards aided by humans | Gayevskiy V, Lee S, Goddard MR. | 2016 Nov | FEMS Yeast Research | 10.1093/femsyr/fow091 | 2001-2051 |
| 14 | Distinct Domestication Trajectories in Top-Fermenting Beer Yeasts and Wine Yeasts | Gonçalves M, Pontes A, Almeida P, Barbosa R, Serra M, Libkind D, Hutzler M, Gonçalves P, Sampaio JP. | 2016 Oct | Current Biology | 10.1016/j.cub.2016.08.040 | 1963-2000 |
| 15 | Whole Genome Analysis of 132 Clinical Saccharomyces cerevisiae Strains Reveals Extensive Ploidy Variation | Zhu YO, Sherlock G, Petrov DA. | 2016 Aug | Genetics Society of America | 10.1534/g3.116.029397 | 1839-1962 |
| 16 | Genomic signatures of adaptation to wine biological ageing conditions in biofilm-forming flor yeasts | Coi AL, Bigey F, Mallet S, Marsit S, Zara G, Gladieux P, Galeote V, Budroni M, Dequin S, Legras JL. | 2017 Apr | Molecular Ecology | 10.1111/mec.14053 | 1838 |
| 17 | Genome Dynamics of Hybrid Saccharomyces cerevisiae During Vegetative and Meiotic Divisions | Dutta A, Lin G, Pankajam AV, Chakraborty P, Bhat N, Steinmetz LM, Nishant KT. | 2017 Nov | Genetics Society of America | 10.1534/g3.117.1135 | 1837 |
| 18 | de novo assembly and population genomic survey of natural yeast isolates with the Oxford Nanopore MinION sequencer | Istace B, Friedrich A, d'Agata L, Faye S, Payen E, Beluche O, Caradec C, Davidas S, Cruaud C, Liti G, Lemainque A, Engelen S, Wincker P, Schacherer J, Aury JM. | 2017 Feb | GigaScience | 10.1093/gigascience/giw018 | 1836 |
| 19 | Deciphering the Genic Basis of Yeast Fitness Variation by Simultaneous Forward and Reverse Genetics | Maclean CJ, Metzger BPH, Yang JR, Ho WC, Moyers B, Zhang J. | 2017 Oct | Molecular Biology and Evolution | 10.1093/molbev/msx151 | 1812-1835 |
| 20 | Multiple Rounds of Artificial Selection Promote Microbe Secondary Domestication-The Case of Cachaça Yeasts | Barbosa R, Pontes A, Santos RO, Montandon GG, de Ponzzes-Gomes CM, Morais PB, Gonçalves P, Rosa CA, Sampaio JP. | 2018 Aug | Genome Biology and Evolution | 10.1093/gbe/evy132 | 1786-1811 |
| 21 | Adaptation of S. cerevisiae to Fermented Food Environments Reveals Remarkable Genome Plasticity and the Footprints of Domestication | Legras JL, Galeote V, Bigey F, Camarasa C, Marsit S, Nidelet T, Sanchez I, Couloux A, Guy J, Franco-Duarte R, Marcet-Houben M, Gabaldon T, Schuller D, Sampaio JP, Dequin S. | 2018 Jul | Molecular Biology and Evolution | 10.1093/molbev/msy066 | 1763-1785 |
| 22 | Genome evolution across 1,011 Saccharomyces cerevisiae isolates | Peter J, De Chiara M, Friedrich A, Yue JX, Pflieger D, Bergström A, Sigwalt A, Barre B, Freel K, Llored A, Cruaud C, Labadie K, Aury JM, Istace B, Lebrigand K, Barbry P, Engelen S, Lemainque A, Wincker P, Liti G, Schacherer J. | 2018 Apr | Nature | 10.1038/s41586-018-0030-5 | 918-1762 |
| 23 | Traditional Norwegian Kveik Are a Genetically Distinct Group of Domesticated Saccharomyces cerevisiae Brewing Yeasts | Preiss R, Tyrawa C, Krogerus K, Garshol LM, van der Merwe G. | 2018 Sep | Frontiers in Microbiology | 10.3389/fmicb.2018.02137 | 910-917 |
| 24 | The origin and adaptive evolution of domesticated populations of yeast from Far East Asia | Duan SF, Han PJ, Wang QM, Liu WQ, Shi JY, Li K, Zhang XL, Bai FY. | 2018 Jul | Nature Communications | 10.1038/s41467-018-05106-7 | 646-909 |
| 25 | Characterization of a New Saccharomyces cerevisiae Isolated From Hibiscus Flower and Its Mutant With L-Leucine Accumulation for Awamori Brewing | Abe T, Toyokawa Y, Sugimoto Y, Azuma H, Tsukahara K, Nasuno R, Watanabe D, Tsukahara M, Takagi H. | 2019 May | Frontiers in Genetics | 10.3389/fgene.2019.00490 | 644-645 |
| 26 | A polyploid admixed origin of beer yeasts derived from European and Asian wine populations | Fay JC, Liu P, Ong GT, Dunham MJ, Cromie GA, Jeffery EW, Ludlow CL, Dudley AM. | 2019 Mar | PLoS Biology | 10.1371/journal.pbio.3000147 | 544-643 |
| 27 | Interspecific hybridization facilitates niche adaptation in beer yeast | Gallone B, Steensels J, Mertens S, Dzialo MC, Gordon JL, Wauters R, Theßeling FA, Bellinazzo F, Saels V, Herrera-Malaver B, Prahl T, White C, Hutzler M, Meußdoerffer F, Malcorps P, Souffriau B, Daenen L, Baele G, Maere S, Verstrepen KJ. | 2019 Nov | Nature Ecology & Evolution | 10.1038/s41559-019-0997-9 | 532-543 |
| 28 | Linking genetic, metabolic, and phenotypic diversity among Saccharomyces cerevisiae strains using multi-omics associations | Kang K, Bergdahl B, Machado D, Dato L, Han TL, Li J, Villas-Boas S, Herrgård MJ, Förster J, Panagiotou G. | 2019 Apr | GigaScience | 10.1093/gigascience/giz015 | 500-531 |
| 29 | Aneuploidy and Ethanol Tolerance in Saccharomyces cerevisiae | Morard M, Macías LG, Adam AC, Lairón-Peris M, Pérez-Torrado R, Toft C, Barrio E. | 2019 Feb | Frontiers in Genetics | 10.3389/fgene.2019.00082 | 496-499 |
| 30 | Revisiting the Taxonomic Synonyms and Populations of Saccharomyces cerevisiae-Phylogeny, Phenotypes, Ecology and Domestication | Pontes A, Hutzler M, Brito PH, Sampaio JP. | 2020 Jun | MDPI | 10.3390/microorganisms8060903 | 466-495 |
| 31 | Population genomics reveals evolution and variation of Saccharomyces cerevisiae in the human and insects gut | Ramazzotti M, Stefanini I, Di Paola M, De Filippo C, Rizzetto L, Berná L, Dapporto L, Rivero D, Tocci N, Weil T, Lenucci MS, Lionetti P, Cavalieri D. | 2019 Jan | Environmental Microbiology | 10.1111/1462-2920.14422 | 455-465 |
| 32 | Whole-genome sequencing from the New Zealand Saccharomyces cerevisiae population reveals the genomic impacts of novel microbial range expansion | Higgins P, Grace CA, Lee SA, Goddard MR. | 2021 Jan | Genetics Society of America | 10.1093/g3journal/jkaa027 | 403-454 |
| 33 | Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes | Basile A, De Pascale F, Bianca F, Rossi A, Frizzarin M, De Bernardini N, Bosaro M, Baldisseri A, Antoniali P, Lopreiato R, Treu L, Campanaro S. | 2021 Aug | Food Microbiology | 10.1016/j.fm.2021.103753 | 338-402 |
| 34 | Adaptive Gene Content and Allele Distribution Variations in the Wild and Domesticated Populations of Saccharomyces cerevisiae | Han DY, Han PJ, Rumbold K, Koricha AD, Duan SF, Song L, Shi JY, Li K, Wang QM, Bai FY. | 2021 Feb | Frontiers in Microbiology | 10.3389/fmicb.2021.631250 | 212-337 |
| 35 | Phylogenomics of a Saccharomyces cerevisiae cocoa strain reveals adaptation to a West African fermented food population | Díaz-Muñoz C, Verce M, De Vuyst L, Weckx S. | 2022 Oct | iScience | 10.1016/j.isci.2022.105309 | 211 |
| 36 | Extensive sampling of Saccharomyces cerevisiae in Taiwan reveals ecology and evolution of predomesticated lineages | Lee TJ, Liu YC, Liu WA, Lin YF, Lee HH, Ke HM, Huang JP, Lu MJ, Hsieh CL, Chung KF, Liti G, Tsai IJ. | 2022 May | Genome Research | 10.1101/gr.276286.121 | 90-210 |
| 37 | Whole genome sequencing of Canadian Saccharomyces cerevisiae strains isolated from spontaneous wine fermentations reveals a new Pacific West Coast Wine clade | Marr RA, Moore J, Formby S, Martiniuk JT, Hamilton J, Ralli S, Konwar K, Rajasundaram N, Hahn A, Measday V. | 2023 Aug | Genetics Society of America | 10.1093/g3journal/jkad130 | 15-89 |
| 38 | Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces | Peris D, Ubbelohde EJ, Kuang MC, Kominek J, Langdon QK, Adams M, Koshalek JA, Hulfachor AB, Opulente DA, Hall DJ, Hyma K, Fay JC, Leducq JB, Charron G, Landry CR, Libkind D, Gonçalves C, Gonçalves P, Sampaio JP, Wang QM, Bai FY, Wrobel RL, Hittinger CT. | 2023 Feb | Nature Communications | 10.1038/s41467-023-36139-2 | 1-14 |